{ "_id": "6a4288c44ba05a737d8a8668", "Package": "lightr", "Title": "Read Spectrometric Data and Metadata", "Version": "2.0.0.9002", "Authors@R": "c(\nperson(\"Hugo\", \"Gruson\", role = c(\"cre\", \"aut\", \"cph\"),\nemail = \"hugo.gruson+R@normalesup.org\",\ncomment = c(ORCID = \"0000-0002-4094-1476\")),\nperson(\"Rafael\", \"Maia\", role = c(\"aut\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-7563-9795\")),\nperson(\"Thomas\", \"White\", role = c(\"aut\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-3976-1734\")),\nperson(\"Kotya\", \"Karapetyan\", role = c(\"ctb\", \"cph\"),\ncomment = \"Author of the MATLAB script to read AvaSoft7 binary files (CC-BY)\")\n)", "Description": "Parse various reflectance/transmittance/absorbance spectra\nfile formats to extract spectral data and metadata, as\ndescribed in Gruson, White & Maia (2019)\n. Among other formats, it can import\nfiles from 'Avantes' , 'CRAIC'\n, and\n'OceanOptics'/'OceanInsight' \nbrands.", "URL": "https://docs.ropensci.org/lightr/,\nhttps://github.com/ropensci/lightr", "BugReports": "https://github.com/ropensci/lightr/issues", "License": "GPL (>=2)", "Roxygen": "list(markdown = TRUE)", "Language": "en-GB", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2025-07-08", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "libxml2-dev", "Repository": "https://colrverse.r-universe.dev", "Date/Publication": "2026-06-29 12:08:07 UTC", "RemoteUrl": "https://github.com/ropensci/lightr", "RemoteRef": "HEAD", "RemoteSha": "78bd9354809fc2d1f6ab97a3d4261c77ff86b65c", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-29 14:54:47 UTC", "User": "root" }, "Author": "Hugo Gruson [cre, aut, cph] (ORCID:\n),\nRafael Maia [aut, cph] (ORCID: ),\nThomas White [aut, cph] (ORCID:\n),\nKotya Karapetyan [ctb, cph] (Author of the MATLAB script to read\nAvaSoft7 binary files (CC-BY))", "Maintainer": "Hugo Gruson ", "MD5sum": "a916dcdc41b40c2247d4c293685b1f51", "_user": "colrverse", "_type": "src", "_file": "lightr_2.0.0.9002.tar.gz", "_fileid": "1f143058650bb4406efb64dfe844dca97e09f3c5e62f0d581d28d8fd1ee5f22b", "_filesize": 5493454, "_sha256": "1f143058650bb4406efb64dfe844dca97e09f3c5e62f0d581d28d8fd1ee5f22b", "_created": "2026-06-29T14:54:47.000Z", "_published": "2026-06-29T15:01:24.520Z", "_distro": "resolute", "_jobs": [ { "job": 84083979834, "time": 185, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7955736483" }, { "job": 84083979886, "time": 133, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "7955713300" }, { "job": 84083979887, "time": 124, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7955715915" }, { "job": 84083979932, "time": 166, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "7955806809" }, { "job": 84083223647, "time": 194, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "7955650850" }, { "job": 84083979848, "time": 169, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7955729420" }, { "job": 84083980839, "time": 100, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7955698515" }, { "job": 84083979850, "time": 91, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7955694903" }, { "job": 84083979912, "time": 116, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "7955707564" } ], "_buildurl": "https://github.com/r-universe/colrverse/actions/runs/28380973054", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/ropensci/lightr", "_commit": { "id": "78bd9354809fc2d1f6ab97a3d4261c77ff86b65c", "author": "Hugo Gruson ", "committer": "Hugo Gruson ", "message": "Bump version\n", "time": 1782734887 }, "_maintainer": { "name": "Hugo Gruson", "email": "hugo.gruson+r@normalesup.org", "login": "bisaloo", "mastodon": "@grusonh@mastodon.social", "orcid": "0000-0002-4094-1476", "description": "Evolutionary Biologist turned Research Software Engineer in R.", "uuid": 10783929 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "future.apply", "role": "Imports" }, { "package": "lifecycle", "role": "Imports" }, { "package": "progressr", "role": "Imports" }, { "package": "xml2", "version": ">= 1.0.0", "role": "Imports" }, { "package": "digest", "role": "Suggests" }, { "package": "future", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "lintr", "role": "Suggests" }, { "package": "pavo", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "ropensci", "_selfowned": false, "_usedby": 3, "_updates": [ { "week": "2025-28", "n": 7 }, { "week": "2025-29", "n": 15 }, { "week": "2025-30", "n": 25 }, { "week": "2025-31", "n": 3 }, { "week": "2025-32", "n": 1 }, { "week": "2025-33", "n": 1 }, { "week": "2025-39", "n": 16 }, { "week": "2025-42", "n": 1 }, { "week": "2025-44", "n": 15 }, { "week": "2026-07", "n": 1 }, { "week": "2026-15", "n": 3 }, { "week": "2026-25", "n": 8 }, { "week": "2026-26", "n": 2 }, { "week": "2026-27", "n": 11 } ], "_tags": [ { "name": "v1.9.0", "date": "2025-07-21" }, { "name": "v2.0.0", "date": "2026-04-10" } ], "_topics": [ "file-import", "reproducibility", "reproducible-research", "reproducible-science", "spectral-data", "spectroscopy" ], "_stars": 15, "_contributors": [ { "user": "bisaloo", "count": 817, "uuid": 10783929 }, { "user": "copilot", "count": 2, "uuid": 198982749 }, { "user": "danielskatz", "count": 1, "uuid": 2913845 }, { "user": "maelle", "count": 1, "uuid": 8360597 } ], "_userbio": { "uuid": 79118872, "type": "organization", "name": "colrverse", "followers": 1 }, "_downloads": { "count": 1065, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/lightr" }, "_devurl": "https://github.com/ropensci/lightr", "_pkgdown": "https://docs.ropensci.org/lightr/", "_searchresults": 19, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/lightr.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/ropensci/lightr", "_realowner": "ropensci", "_cranurl": true, "_releases": [ { "version": "0.1", "date": "2019-11-19" }, { "version": "1.0", "date": "2020-01-27" }, { "version": "1.1", "date": "2020-04-01" }, { "version": "1.2", "date": "2020-06-29" }, { "version": "1.3", "date": "2020-06-30" }, { "version": "1.4", "date": "2021-03-21" }, { "version": "1.5.0", "date": "2021-06-19" }, { "version": "1.6.0", "date": "2021-07-22" }, { "version": "1.6.1", "date": "2021-11-08" }, { "version": "1.6.2", "date": "2021-11-09" }, { "version": "1.7.0", "date": "2022-05-14" }, { "version": "1.7.1", "date": "2024-03-21" }, { "version": "1.8.0", "date": "2024-12-01" }, { "version": "1.9.0", "date": "2025-07-21" }, { "version": "2.0.0", "date": "2026-04-11" } ], "_exports": [ "lr_convert_tocsv", "lr_get_metadata", "lr_get_spec", "lr_parse_abs", "lr_parse_avantes_abs", "lr_parse_avantes_irr8", "lr_parse_avantes_raw8", "lr_parse_avantes_rfl8", "lr_parse_avantes_roh", "lr_parse_avantes_trm", "lr_parse_avantes_trt", "lr_parse_avantes_ttt", "lr_parse_craic_spc", "lr_parse_csv", "lr_parse_generic", "lr_parse_irr8", "lr_parse_jaz", "lr_parse_jazirrad", "lr_parse_jdx", "lr_parse_oceanoptics_jaz", "lr_parse_oceanoptics_jazirrad", "lr_parse_oceanoptics_jdx", "lr_parse_oceanoptics_procspec", "lr_parse_oceanoptics_spc", "lr_parse_procspec", "lr_parse_raw8", "lr_parse_rfl8", "lr_parse_roh", "lr_parse_spc", "lr_parse_trm", "lr_parse_trt", "lr_parse_ttt" ], "_help": [ { "page": "lr_convert_tocsv", "title": "Convert spectral data files to csv files", "topics": [ "lr_convert_tocsv" ] }, { "page": "lr_get_metadata", "title": "Extract metadata from spectra files", "topics": [ "lr_get_metadata" ] }, { "page": "lr_get_spec", "title": "Extract spectral data from spectra files", "topics": [ "lr_get_spec" ] }, { "page": "lr_parse_csv", "title": "Parse csv files", "topics": [ "lr_parse_csv" ] }, { "page": "lr_parse_generic", "title": "Generic function to parse spectra files that don't have a specific parser", "topics": [ "lr_parse_generic" ] }, { "page": "lr_parse_oceanoptics_jaz", "title": "Parse OceanOptics converted file", "topics": [ "lr_parse_jaz", "lr_parse_jazirrad", "lr_parse_oceanoptics_jaz", "lr_parse_oceanoptics_jazirrad" ] }, { "page": "lr_parse_oceanoptics_jdx", "title": "Parse OceanOptics JCAMP-DX (.jdx) file", "topics": [ "lr_parse_jdx", "lr_parse_oceanoptics_jdx" ] }, { "page": "lr_parse_oceanoptics_procspec", "title": "Parse OceanOptics ProcSpec file", "topics": [ "lr_parse_oceanoptics_procspec", "lr_parse_procspec" ] }, { "page": "lr_parse_craic_spc", "title": "Parse SPC binary file", "topics": [ "lr_parse_craic_spc", "lr_parse_oceanoptics_spc", "lr_parse_spc" ] }, { "page": "lr_parse_avantes_trm", "title": "Parse Avantes binary file", "topics": [ "lr_parse_abs", "lr_parse_avantes_abs", "lr_parse_avantes_irr8", "lr_parse_avantes_raw8", "lr_parse_avantes_rfl8", "lr_parse_avantes_roh", "lr_parse_avantes_trm", "lr_parse_irr8", "lr_parse_raw8", "lr_parse_rfl8", "lr_parse_roh", "lr_parse_trm" ] }, { "page": "lr_parse_avantes_ttt", "title": "Parse Avantes converted file", "topics": [ "lr_parse_avantes_trt", "lr_parse_avantes_ttt", "lr_parse_trt", "lr_parse_ttt" ] } ], "_pkglogo": "https://github.com/ropensci/lightr/raw/HEAD/man/figures/logo.svg", "_readme": "https://github.com/ropensci/lightr/raw/HEAD/README.md", "_rundeps": [ "cli", "codetools", "digest", "future", "future.apply", "globals", "lifecycle", "listenv", "parallelly", "progressr", "rlang", "xml2" ], "_vignettes": [ { "source": "batch_import.Rmd", "filename": "batch_import.html", "title": "Batch import with lr_get_spec() and lr_get_metadata()", "author": "Hugo Gruson", "engine": "knitr::rmarkdown", "headings": [ "Import spectral data: lr_get_spec()", "Import spectral metadata: lr_get_metadata()", "Convert spectral data to csv: lr_convert_tocsv()" ], "created": "2018-11-23 12:48:29", "modified": "2025-07-08 17:42:28", "commits": 19 }, { "source": "design-principles.Rmd", "filename": "design-principles.html", "title": "Design Principles for lightr", "engine": "knitr::rmarkdown", "headings": [ "Scope", "Architecture", "Naming conventions" ], "created": "2025-05-29 14:34:38", "modified": "2025-07-25 10:26:16", "commits": 5 }, { "source": "true_example.Rmd", "filename": "true_example.html", "title": "Real life example", "author": "Hugo Gruson", "engine": "knitr::rmarkdown", "headings": [ "Comparison of outputs", "Example of analysis" ], "created": "2019-09-02 15:31:22", "modified": "2025-07-08 17:42:28", "commits": 14 }, { "source": "renormalise.Rmd", "filename": "renormalise.html", "title": "Renormalise spectral data with a custom reference", "author": "Hugo Gruson", "engine": "knitr::rmarkdown", "headings": [ "Step 1: import un-normalised data", "Step 2: find the matching white reference", "Step 3: normalise the reflectance data" ], "created": "2018-12-13 12:53:47", "modified": "2025-07-25 10:26:16", "commits": 10 } ], "_score": 8.360716263284473, "_indexed": false, "_nocasepkg": "lightr", "_universes": [ "colrverse" ], "_indexurl": "https://ropensci.r-universe.dev/lightr", "_previous": "2.0.0.9001", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.0.9002", "date": "2026-06-29T14:57:53.000Z", "distro": "resolute", "commit": "78bd9354809fc2d1f6ab97a3d4261c77ff86b65c", "fileid": "9acea1c601ad27978079582549758a125c8121ce57e239107cef895303d72b00", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/colrverse/actions/runs/28380973054" }, { "r": "4.6.1", "os": "linux", "version": "2.0.0.9002", "date": "2026-06-29T14:56:56.000Z", "distro": "resolute", "commit": "78bd9354809fc2d1f6ab97a3d4261c77ff86b65c", "fileid": "1e6f5d72a7d5ae8563607833241c5b9d9d640b74d7c8475852a039f9354bc148", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/colrverse/actions/runs/28380973054" }, { "r": "4.5.3", "os": "mac", "version": "2.0.0.9002", "date": "2026-06-29T14:57:03.000Z", "commit": "78bd9354809fc2d1f6ab97a3d4261c77ff86b65c", "fileid": "0ab52feee23518c7b2a3f7ea6ede1e4b8c30949bfb826fbad8e4e967f61abd17", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/colrverse/actions/runs/28380973054" }, { "r": "4.6.1", "os": "mac", "version": "2.0.0.9002", "date": "2026-06-29T15:00:12.000Z", "commit": "78bd9354809fc2d1f6ab97a3d4261c77ff86b65c", "fileid": "5117e4b6846a4221b80ba16acab92155367d920d3048db0e5d3fff5719863600", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/colrverse/actions/runs/28380973054" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.0.9002", "date": "2026-06-29T14:57:53.000Z", "commit": "78bd9354809fc2d1f6ab97a3d4261c77ff86b65c", "fileid": "e46b8a9e455d7f9591cefd5cb42378d3aaddbc67ae49f988150755423f78a1e3", "status": "success", "buildurl": "https://github.com/r-universe/colrverse/actions/runs/28380973054" }, { "r": "4.7.0", "os": "win", "version": "2.0.0.9002", "date": "2026-06-29T14:56:10.000Z", "commit": "78bd9354809fc2d1f6ab97a3d4261c77ff86b65c", "fileid": "3d9a5c3f99f42c3af450907a6643d358262363bc95d1b05e411da2ed2045b11d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/colrverse/actions/runs/28380973054" }, { "r": "4.5.3", "os": "win", "version": "2.0.0.9002", "date": "2026-06-29T14:56:03.000Z", "commit": "78bd9354809fc2d1f6ab97a3d4261c77ff86b65c", "fileid": "6f6e758af0204b8acb95605aca4ab6d1a61f73042cc9b254d2cdd881c0330091", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/colrverse/actions/runs/28380973054" }, { "r": "4.6.1", "os": "win", "version": "2.0.0.9002", "date": "2026-06-29T14:56:26.000Z", "commit": "78bd9354809fc2d1f6ab97a3d4261c77ff86b65c", "fileid": "7c7a388bb21f125d0908c0b948e75931f253dc14b36aff5e0f277284467c5cd2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/colrverse/actions/runs/28380973054" } ] }